Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS44026319
Basic Information
VIS ID
TVIS44026319
Fusion event
HTLV-1-HABP4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.32
Reference genome
GRCh37/hg19
Start
99219666/96457384 (Hg38)
End
99219666/96457384 (Hg38)
Orient
-
Location type
Intronic
Target gene
HABP4
miRNAs that regulate target gene
hsa-mir-130b-3p
;
hsa-mir-19b-3p
;
hsa-mir-130a-3p
;
hsa-mir-301a-3p
;
hsa-mir-519c-3p
;
hsa-mir-519b-3p
;
hsa-mir-519a-3p
;
hsa-mir-454-3p
;
hsa-mir-301b-3p
;
hsa-mir-4295
;
hsa-mir-3666
;
hsa-mir-323a-5p
;
hsa-mir-578
;
hsa-mir-4775
;
hsa-mir-30e-5p
;
hsa-mir-30d-5p
;
hsa-mir-30c-5p
;
hsa-mir-30b-5p
;
hsa-mir-30a-5p
;
hsa-mir-520e
;
hsa-mir-520d-3p
;
hsa-mir-520c-3p
;
hsa-mir-520b
;
hsa-mir-520a-3p
;
hsa-mir-373-3p
;
hsa-mir-372-3p
;
hsa-mir-302e
;
hsa-mir-302d-3p
;
hsa-mir-302c-3p
;
hsa-mir-302b-3p
;
hsa-mir-302a-3p
Nearest miRNA
hsa-let-7a-1/Upstream/1371290; hsa-mir-12126/Downstream/906170;
Nearest TSS
ENST00000422679/Upstream/7179;
ENST00000466976/Downstream/25641;
Nearest CpG islands
None/Target,
chr9-CpG: 64/Upstream/6159
,
chr9-CpG: 61/Downstream/39128
Upstream sequence
gagccgagatcgggccattgcactccagcctgggcaacaagagtgaaactcagtctcaaaaaaaaaacacaagaacaaaaCCAGAGTCTGTGGTCCCAGC
Downstream sequence
ACAGTGTCCAAGTGCTGGACTGAGTGGACAAAAAGAGATGCCCTCAAGTACTGGCTGACTCTTGGGCAAGTTGCCAAATAGCAGTGTTTGGTTCATATTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HTLV-1 carrier#1
Sample type
Nontumor
Gender
Female
CpG Island Information
×
Download
Curate