Basic Information
VIS ID
TVIS44026323
Fusion event
HTLV-1-COL15A1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
101759452/98997170 (Hg38)
End
101759452/98997170 (Hg38)
Orient
+
Location type
Intronic
Target gene
COL15A1
miRNAs that regulate target gene
hsa-mir-29c-3p ; hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-29b-3p
Nearest miRNA
hsa-let-7a-1/Upstream/767953; hsa-mir-12126/Downstream/7603758;
Nearest TSS
ENST00000422679/Upstream/53395; ENST00000496686/Downstream/41503;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/11369, chr9-CpG: 142/Downstream/107542
Upstream sequence
CCCCAAACAAGGCAAGTCCGGATGCACATGCCTACGTAGTGGCCTtttattgggtgattactatgtgtccagccggggccatgtatgtaacatacagaat
Downstream sequence
ctcatttaaccttcccctcaaccctttaagaaagggtgagaaccaccctcattttacagacaagaggaggaaattgagccacagagaagttaagtaaccc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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