Basic Information
VIS ID
TVIS44026349
Fusion event
HTLV-1-CELF2-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
11361838/11319875 (Hg38)
End
11361838/11319875 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
CELF2-AS1
Nearest miRNA
hsa-mir-3155a/Upstream/5167598; hsa-mir-107/Downstream/810885;
Nearest TSS
ENST00000439456/Upstream/148499; ENST00000604634/Downstream/9;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/18318, chr10-CpG: 54/Downstream/24428
Upstream sequence
GCCTAATTCATATCTTACATGTGTCCTTTTAATTGAAGAGGCGAAGTTGGCCAAATAGAAGCACAAGTGGAGTAAACAGAACATTCCCCACCTGCTCTGT
Downstream sequence
TAGGGCAGTAGCGTTGCTGGGCGTGTGGAGGTCACTCTGCTGCCGGATTCTCTGGTGTTTCCAGGCAGCCTTACCTTAGCTGTCCTCCATTCTCATTAGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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