VISDB Viral Integration Site DataBase

VIS ID

TVIS44026352

Fusion event

HTLV-1-NHLRC2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr10

Cytoband

q25.3

Reference genome

Start

End

115637203/113877444 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4524a-3p ; hsa-mir-6788-5p ; hsa-mir-548aw ; hsa-mir-633 ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-4424 ; hsa-mir-6835-3p ; hsa-mir-548e-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-7977 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-1827 ; hsa-mir-383-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-8063 ; hsa-mir-6807-3p ; hsa-mir-217 ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-6796-3p ; hsa-mir-6776-3p ; hsa-mir-4668-3p ; hsa-mir-6818-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-6732-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-4722-5p ; hsa-mir-219b-3p ; hsa-mir-6768-5p ; hsa-mir-302f ; hsa-mir-4775 ; hsa-mir-202-3p ; hsa-mir-5580-3p ; hsa-mir-590-3p ; hsa-let-7d-5p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7e-5p ; hsa-let-7c-5p ; hsa-mir-4458 ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-4500 ; hsa-mir-98-5p

Nearest miRNA

hsa-mir-107/Upstream/99390; hsa-mir-202/Downstream/296661;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/22147, chr10-CpG: 230/Downstream/165880

Upstream sequence

CCAACAAAATATAGCCGTATCTTTTTAAAGATCATGTCAGTGCCCCATGAACTTGAGATGTAGTTTATAAAATAAATAAGCTAGAATTTGTGCATAGTTT

Downstream sequence

TACTTTTCTCTCCTTTCTTCCATAAGAACTTGAACATGTTTCTGGATCTATTTCCAGAATAGAAATAGGTGTAGCAGAGTATGAGTATCATGCAAGCGTA