Basic Information
VIS ID
TVIS44026368
Fusion event
HTLV-1-LOC107984276 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.13
Reference genome
GRCh37/hg19
Start
125725523/123966007 (Hg38)
End
125725523/123966007 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Target gene
LOC107984276
Nearest miRNA
hsa-mir-107/Upstream/1548940; hsa-mir-202/Downstream/1066776;
Nearest TSS
ENST00000439456/Upstream/25740; ENST00000487190/Downstream/72612;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/74070, chr10-CpG: 53/Downstream/6697
Nearby gene
CHST15(-41659) ;
Upstream sequence
TGCGGTGAGAGAGTCCCAGCGTCACCCATCACCCCAGCAGGTCAGGGGCCCTGGAGTCCCCCCTTGATGAATGACCTTAGCAGGAAAGAGAAATCTGCCC
Downstream sequence
CCTCTCCATGCCCCACACCCACAGCCAAACAGTGGCTTCTCACCACTCCAGCTTCCTTTCCAAGAGGGTCCAAGCTCCCACCGTGGCTTCCACACTATTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate