Basic Information
VIS ID
TVIS44026374
Fusion event
HTLV-1-C10orf90 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
128255593/126567024 (Hg38)
End
128255593/126567024 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Target gene
C10orf90
Nearest miRNA
hsa-mir-107/Upstream/747202; hsa-mir-202/Downstream/3276275;
Nearest TSS
ENST00000439456/Upstream/42201; ENST00000473861/Downstream/103422;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/62062, chr10-CpG: 171/Downstream/338016
Nearby gene
C10orf90(No orient, 45583)
Upstream sequence
CCCAGGGAGAAGATTTGGGGGCAAGAGGAGAGGAAGTGAAAATTTCCATTTAGACACACCCATACTGAGAGGCGTATTACCCACCAAAGGTGGCCCTGGG
Downstream sequence
TGGGCCATTGCCTGTGAACATGGAGCTCAGAGGGGACCCTGCGGGGAGCCACAGCTGGGTGCCCTGGTCATAAAGAAGTAGTTACAGCCATGGGGATtgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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