Basic Information
VIS ID
TVIS44026380
Fusion event
HTLV-1-LOC105378555 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
130611434/128813170 (Hg38)
End
130611434/128813170 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
LOC105378555
Nearest miRNA
hsa-mir-107/Upstream/2993348; hsa-mir-202/Downstream/1030129;
Nearest TSS
ENST00000439456/Upstream/492956; ENST00000446589/Downstream/99709;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/102776, chr10-CpG: 98/Downstream/653514
Nearby gene
LINC01163(No orient, 495444)
Upstream sequence
AGTGTTAAGattcccatttgcggatgaggcaaactgagagagacaaaggaaatcgcccaagggcacatagctagtaagctgtggaatagggggttaagct
Downstream sequence
caTTTGCTCTCTCTCTCTGATTCTGGCAGAAGCTTGGCTTTGATGCTTTGCTCATTATGAAAACGTTTGTGAAAAGCTGAGCTAATTTATGTGTCCTGAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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