Basic Information
VIS ID
TVIS44026382
Fusion event
HTLV-1-LINC02646 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
132148021/130349757 (Hg38)
End
132148021/130349757 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
LINC02646
Nearest miRNA
hsa-mir-107/Upstream/506383; hsa-mir-202/Downstream/612831;
Nearest TSS
ENST00000439456/Upstream/169572; ENST00000439421/Downstream/89310;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/146473, chr10-CpG: 31/Downstream/217664
Nearby gene
GLRX3(+169375) ;
Upstream sequence
cgtttgtgataatctgtcttaatgtagaaatacatgaagaatccattctcttgagtcaataaggaacctcactgtgtcacccaggctggagtgcagtggc
Downstream sequence
gtaaccttaactcactgcaacctccacctcccgggttcgagcggttctcctgcctcagccgccagggtagctggaactataggcattcaccaccacactg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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