Basic Information
VIS ID
TVIS44026383
Fusion event
HTLV-1-PWWP2B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
134228096/132414592 (Hg38)
End
134228096/132414592 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
PWWP2B
Nearest miRNA
hsa-mir-107/Upstream/1451924; hsa-mir-202/Downstream/832919;
Nearest TSS
ENST00000439456/Upstream/17424; ENST00000428814/Downstream/4491;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/8481, chr10-CpG: 36/Downstream/10781
Upstream sequence
CCAAACAGCCCTCCTCCTGACCCATCTTGCACGCAGTCCCTGGTGACTCCCTAGAAGTTTGGGAGGGACCCCAGGGGCTGGAGGATGCATAGGTGGAGCT
Downstream sequence
GCTGCGATTCCGGGGTCGGCCTCTACCTCGCTGTCAGCCGTGGAGTGGGTGGCTCAGTTTGCCTTGTTACAGCTGCCTCTTCCTTCTGAGAAATGGAAGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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