Basic Information
VIS ID
TVIS44026388
Fusion event
HTLV-1-LOC105376419 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
13434594/13392594 (Hg38)
End
13434594/13392594 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376419
Nearest miRNA
hsa-mir-3155a/Upstream/667241; hsa-mir-107/Downstream/990606;
Nearest TSS
ENST00000439456/Upstream/44296; ENST00000448272/Downstream/22608;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/43654, chr10-CpG: 21/Downstream/79313
Nearby gene
SEPHS1(-44296) ;
Upstream sequence
aaaggctttcaaacaaatgtgtgaatatttgacatagtaacttcacttgtagaaacccgattagcctaaagaaatagccagcaaggctgggcgtggtggc
Downstream sequence
cacatttgtaatccccgcactttgggaggctgaggtgggtggatcgcttgagcccacagtttgagatcgcctgggcaacatggtgaaaccctgtgtctac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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