Basic Information
VIS ID
TVIS44026399
Fusion event
HTLV-1-PRTFDC1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
25191573/24902644 (Hg38)
End
25191573/24902644 (Hg38)
Orient
-
Location type
Intronic
Target gene
PRTFDC1
Nearest miRNA
hsa-mir-1265/Upstream/626863; hsa-mir-107/Downstream/3386614;
Nearest TSS
ENST00000439456/Upstream/178976; ENST00000610158/Downstream/49940;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/177757, chr10-CpG: 72/Downstream/49537
Upstream sequence
TCTCCTCCTCATAAATTCCATTGCAGTGCAAACTGTCTTAGGAAAGGCGATTTTTCTAGGTGCTCCAGAGAAAGTTGACTTTTATATTTTTCTTCAAACT
Downstream sequence
TAGAGCAAAGAGAATGACAAATTCAGAGAACTGTCTTTTCTCATCACCCAGTGACAAGGTAACAAGAAGGAAAGTAAAATGGACTCTAACAAGATTACAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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