Basic Information
VIS ID
TVIS44026405
Fusion event
HTLV-1-GAD2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
26515348/26226419 (Hg38)
End
26515348/26226419 (Hg38)
Orient
+
Location type
Intronic
Target gene
GAD2
Nearest miRNA
hsa-mir-1265/Upstream/1950638; hsa-mir-107/Downstream/2062839;
Nearest TSS
ENST00000439456/Upstream/8226; ENST00000356785/Downstream/211784;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/7914, chr10-CpG: 53/Downstream/165286
Upstream sequence
ACCCTCACTGATAATGGGGGATTTTCACATGGAGAAGACTTCAGCTTGAGCATGGGAATTATAGGCTTCCTTGGAGCCTAAAGACCCATTTGCTCTTACG
Downstream sequence
CCAAGATGCAAGCCATAGATGTCACACTACAGTGCAGTGCAGACATTGCAAAGTTGGGAGGAGACAGCAGAAAAGGTCATTGCAACCTGTTTCTGCTCTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate