VISDB Viral Integration Site DataBase

VIS ID

TVIS44026411

Fusion event

HTLV-1-BAMBI integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr10

Cytoband

p12.1

Reference genome

Start

End

28968877/28679948 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-374b-5p ; hsa-mir-10a-5p ; hsa-mir-1180-3p ; hsa-mir-760 ; hsa-mir-484 ; hsa-mir-106b-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-1252-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-500a-5p ; hsa-mir-5692a ; hsa-mir-1264 ; hsa-mir-3184-3p ; hsa-mir-6818-3p ; hsa-mir-6895-3p ; hsa-mir-1250-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-4298 ; hsa-mir-450a-1-3p ; hsa-mir-1302 ; hsa-mir-6740-5p ; hsa-mir-3649 ; hsa-mir-6849-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-511-5p ; hsa-mir-6740-3p ; hsa-mir-593-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3646 ; hsa-mir-153-3p ; hsa-mir-3941 ; hsa-mir-5689 ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-3124-3p ; hsa-mir-1207-3p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-5693 ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-6889-3p ; hsa-mir-205-5p

Nearest miRNA

hsa-mir-1265/Upstream/390598; hsa-mir-107/Downstream/865056;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/1611, chr10-CpG: 33/Downstream/42176

Upstream sequence

AAGCAAGGTTCTTACTTGAAGCAGAGAAGGAACTTGGGCCCAACCAGTGCAGATTTAGGAGCAAGACCCCTAGCTTTGGACTGTTAAGGGTTGCCAAAGA

Downstream sequence

TCTGTGTTTAGCGGGCTGGTTTTCCTTAGAACCGAAGCATTAGCAGCGTCCGGTGAAAACTGAGCATACAATACCGTGGTCTGGAATTTGGACAGATAAT