Basic Information
VIS ID
TVIS44026420
Fusion event
HTLV-1-LOC105376360 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
3501410/3459218 (Hg38)
End
3501410/3459218 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC105376360
Nearest miRNA
hsa-mir-5699/Upstream/1383129; hsa-mir-107/Downstream/531942;
Nearest TSS
ENST00000439456/Upstream/193215; ENST00000421629/Downstream/43620;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/382, chr10-CpG: 37/Downstream/97065
Upstream sequence
TGTCCTCCCTTGACCTAACTTCCAGACAGAACCACCTCTACTATTCCCATCTGATTTATGTCAAAATTCACACTTGTgcctggcgcggtggctcacgcct
Downstream sequence
gtaatcccagcactttgggaggccaaggcaggtggatcgcgaggacaggagatcaagaccatcctcgctgacatggtgaaaccccgtctctactaaaaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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