Basic Information
VIS ID
TVIS44026441
Fusion event
HTLV-1-RSU1P2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
45596925/45101477 (Hg38)
End
45596925/45101477 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA10G
Target gene
RSU1P2
Nearest miRNA
hsa-mir-1265/Upstream/2103796; hsa-mir-107/Downstream/62537;
Nearest TSS
ENST00000439456/Upstream/100589; ENST00000483623/Downstream/79950;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/100139, chr10-CpG: 64/Downstream/97066
Upstream sequence
aatgagataccccaaaggcatctcaaacttaacatattgaaactcagttcagtacgacctcctctcctcaatccctctcctaatctactcttcctactcc
Downstream sequence
taatctactcttcctataacctttctactcttcctataacctttcctagccttccagttgcttagactaaaacctcacagttaaccttaactttctcacc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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