Basic Information
VIS ID
TVIS44026480
Fusion event
HTLV-1-ZNF503-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
77115890/75356132 (Hg38)
End
77115890/75356132 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA10D
Target gene
ZNF503-AS1
Nearest miRNA
hsa-mir-1265/Upstream/2635032; hsa-mir-107/Downstream/196326;
Nearest TSS
ENST00000439456/Upstream/59635; ENST00000527641/Downstream/45114;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/60807, chr10-CpG: 983/Downstream/39238
Upstream sequence
gttcccaggagagagtgacaagtgaaagccacattacctcttaggatttagctttgccagtagtgcagcatcacatctgctacgtttcatttgcaagttc
Downstream sequence
tgcccaatttcaaggagtggggaTGTCAAGATTCTAGAAAAGGGGGTGGCACTGGAGATACTATAGTGAACCttttttaaaattttatgtatttattttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate