VISDB Viral Integration Site DataBase

VIS ID

TVIS44026483

Fusion event

HTLV-1-DLG5 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr10

Cytoband

q22.3

Reference genome

Start

End

79664695/77904937 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-215-5p ; hsa-mir-484 ; hsa-mir-20a-5p ; hsa-mir-432-5p ; hsa-mir-377-5p ; hsa-mir-4668-5p ; hsa-mir-548aw ; hsa-mir-1287-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-3613-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-3943 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4295 ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-3666 ; hsa-mir-454-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-1285-3p ; hsa-mir-185-3p ; hsa-mir-185-5p ; hsa-mir-3187-5p ; hsa-mir-3190-3p ; hsa-mir-3202 ; hsa-mir-3714 ; hsa-mir-380-5p ; hsa-mir-4306 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4505 ; hsa-mir-4533 ; hsa-mir-4644 ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-5001-5p ; hsa-mir-5189-5p ; hsa-mir-563 ; hsa-mir-5787 ; hsa-mir-605-3p ; hsa-mir-6085 ; hsa-mir-612 ; hsa-mir-6732-5p ; hsa-mir-6768-3p ; hsa-mir-6798-5p ; hsa-mir-6808-5p ; hsa-mir-6813-5p ; hsa-mir-6833-5p ; hsa-mir-6860 ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7114-5p ; hsa-mir-762 ; hsa-mir-7974 ; hsa-mir-8089 ; hsa-mir-940

Nearest miRNA

hsa-mir-1265/Upstream/2352384; hsa-mir-107/Downstream/8359757;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/193270, chr10-CpG: 158/Downstream/21024

Upstream sequence

CCTGGCTCCggccgggcgcggtggctcaggcctgtaatcccaacactttgagaggctgaggcgggtggattgcctgaggtcaggagtttgagaccagcct

Downstream sequence

gaccaacatggtgaaaccccatctctactaaaaatacaaaaattagccgggtgtggtggcaggtgcctgtaatcccagctactcgggaggctgaggaagg