VISDB Viral Integration Site DataBase

VIS ID

TVIS44026499

Fusion event

HTLV-1-IDE integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr10

Cytoband

q23.33

Reference genome

Start

End

94320751/92560994 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-572 ; hsa-mir-2276-3p ; hsa-mir-4772-3p ; hsa-mir-6728-3p ; hsa-mir-6817-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-6878-3p ; hsa-mir-6807-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-1236-3p ; hsa-mir-877-3p ; hsa-mir-6872-3p ; hsa-mir-4695-3p ; hsa-mir-3529-3p ; hsa-mir-1908-5p ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4787-5p ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-663a ; hsa-mir-665 ; hsa-mir-6787-5p ; hsa-mir-6840-3p ; hsa-mir-1-5p ; hsa-mir-3065-5p ; hsa-mir-3617-5p ; hsa-mir-641

Nearest miRNA

hsa-mir-107/Upstream/2968167; hsa-mir-1287/Downstream/3503321;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/139997, chr10-CpG: 127/Downstream/12496

Upstream sequence

CACACCCACCACCTTCACTCCATCCTCACCTGGGTTCTAGACAATAAGGCGAACTCAGGCCGGGTGTGGTGGCTCAggctgggcgtggtggctcacacct

Downstream sequence

gtaatcccagaactttgggaggccaaggtggatggatcacctgaggtcaggagttcgagaccagcttggccaacatggtgaaaccctgtctttctactaa