Basic Information
VIS ID
TVIS44026518
Fusion event
HTLV-1-ZBED5-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
10881839/10860292 (Hg38)
End
10881839/10860292 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
ZBED5-AS1
Nearest miRNA
hsa-mir-210/Upstream/351966; hsa-let-7a-2/Downstream/796359;
Nearest TSS
ENST00000527297/Upstream/1496; ENST00000530344/Downstream/4969;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1386, chr11-CpG: 86/Downstream/70511
Upstream sequence
ggtagtttttcctgtggtctcacatgctctctctcacctgccgtcatgtaagacctgccctgtaagacgtgcctgcttccccttcctccatgattggaaa
Downstream sequence
attttgtgaggccgcccaggcatgtgcagctgagtcaattaaacctctttcctttataaattacccagtctcggtatttctttatagcagtgtgagaatg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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