Basic Information
VIS ID
TVIS44026520
Fusion event
HTLV-1-LOC105369489 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
110891967/111021243 (Hg38)
End
110891967/111021243 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369489
Nearest miRNA
hsa-mir-10392/Upstream/7171263; hsa-let-7a-2/Downstream/326514;
Nearest TSS
ENST00000527297/Upstream/308054; ENST00000635886/Downstream/69125;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/308083, chr11-CpG: 114/Downstream/277336
Nearby gene
C11orf53(No orient, 234740)
Upstream sequence
AGAAGTTGGTGAAAGTCAGAAGTGAGCAGACGTTAGACTGGCACCTTGGTTCATTCGCGTTCTCCATTCTATCAGCCCCAGAACCTAAGGCCTAGGAAGC
Downstream sequence
CAGGGCAAGGGTGGAGCCTCCGATTCACAGCTGACCATGTGCCAGCTCCAGCTGAGAATGTAGACAGAGTAAACTATTCAAAGAGGCAGGCCAGGGGACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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