Basic Information
VIS ID
TVIS44026540
Fusion event
HTLV-1-MIR100HG integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
122220884/122350176 (Hg38)
End
122220884/122350176 (Hg38)
Orient
-
Location type
Intronic
Target gene
MIR100HG
Nearest miRNA
hsa-let-7a-2/Upstream/197868; hsa-mir-3167/Downstream/1031264;
Nearest TSS
ENST00000527297/Upstream/48413; ENST00000525711/Downstream/305499;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/897583, chr11-CpG: 113/Downstream/305394
Nearby gene
MIR100HG(-147114) ;
Nearest cancer related gene
MIR100HG(OG, No orient, 0)
Upstream sequence
GTTTTGTCAATGTCTCCATTCTGCCATATCTCACATGGCATTGTAATCAGTTGGTTGTTTTTTTTTTTTACCCACTTCTCACAGTAGGCTAGGAGATCCT
Downstream sequence
CAGGAAGATAAACTATGCCTTCATTATAATTGTCTTTAGTACCTGCTAAATCTGGCATGTAGCAGTCTCTGGTAGGATTTGTTTTCTGCATCTTACAGTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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