Basic Information
VIS ID
TVIS44026548
Fusion event
HTLV-1-FAM118B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
126096631/126226736 (Hg38)
End
126096631/126226736 (Hg38)
Orient
+
Location type
Intronic
Target gene
FAM118B
Nearest miRNA
hsa-let-7a-2/Upstream/2845224; hsa-mir-3167/Downstream/761722;
Nearest TSS
ENST00000527297/Upstream/14959; ENST00000527247/Downstream/2488;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/14603, chr11-CpG: 78/Downstream/41728
Upstream sequence
TACCTCTTTTGGCCTCCAGTTCTGTTGCCATTTTAAATAGGAAGGTCAAGAACCCAGCATTggccaggtgcagtggctcacacctgtaactgaagcactt
Downstream sequence
tgggagggctgaggcaggcggatcacttgagcctgggcgttcaagaccaacctggacaacatggtgaaaccccgtgtctacaaaaaattagccaggcatg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate