Basic Information
VIS ID
TVIS44026560
Fusion event
HTLV-1-LOC105376514 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
1489149/1467919 (Hg38)
End
1489149/1467919 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376514
Nearest miRNA
hsa-mir-210/Upstream/211249; hsa-let-7a-2/Downstream/391545;
Nearest TSS
ENST00000527297/Upstream/13492; ENST00000534077/Downstream/5517;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/5195, chr11-CpG: 25/Downstream/2048
Nearby gene
MOB2(-1529) ;
Upstream sequence
GACAGCGCACAGCACAGTCCCCTCAGCCCAGGAGAGGGACAGGTCCACCAGACAATGGCCTAGCAGCAGGCGCCCCCAACGCCCAGCGCCAGCCCTCATC
Downstream sequence
CCAGGCACCCTTCCCAAAGGAACTCATGCCCGCGACTCCCACGTGCCCTGGGGACCCTGCAGCTGCATCCTGAGTGTGAGACCGGCACGAATGCGCGCCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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