Basic Information
VIS ID
TVIS44026575
Fusion event
HTLV-1-LINC02699 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
25803815/25782268 (Hg38)
End
25803815/25782268 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02699
Nearest miRNA
hsa-mir-210/Upstream/2363078; hsa-let-7a-2/Downstream/1732702;
Nearest TSS
ENST00000527297/Upstream/47459; ENST00000531157/Downstream/141920;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1285076, chr11-CpG: 29/Downstream/549722
Nearby gene
ANO3(+406855) ;
Upstream sequence
aaatgactacattaattccccagtaagggatcttaacttggccgaaatggctaatattacagaaatagatttcagaatatggtcaggaaggaagatcatt
Downstream sequence
gagattcaggagaaagtcaaaacccaatccaagaaatataaagattacaataaaatgatacaagagctgatacacaaaatggtcattataagaagaatga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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