Basic Information
VIS ID
TVIS44026580
Fusion event
HTLV-1-ANO3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.2
Reference genome
GRCh37/hg19
Start
26615115/26593568 (Hg38)
End
26615115/26593568 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11D
Target gene
ANO3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-18a-3p ; hsa-mir-186-5p ; hsa-mir-26a-5p
Nearest miRNA
hsa-mir-210/Upstream/3174378; hsa-let-7a-2/Downstream/921402;
Nearest TSS
ENST00000527297/Upstream/21335; ENST00000318627/Downstream/128431;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/261303, chr11-CpG: 29/Downstream/769504
Upstream sequence
aagactaagaaggccgcgccagtgtcctggggacagttaaactcctggccctcaatggtcaagcatacccggggctctgtgagggtgatggcatgggctg
Downstream sequence
gcgcttgccctgggcaccctcagtcctgctgctggatcatctggttagtggcttctgacccagaggaccttcattccctggggaagtgggccttccagtg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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