Basic Information
VIS ID
TVIS44026585
Fusion event
HTLV-1-KCNQ1-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
2865718/2844488 (Hg38)
End
2865718/2844488 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
KCNQ1-AS1
Nearest miRNA
hsa-mir-210/Upstream/671350; hsa-let-7a-2/Downstream/1011574;
Nearest TSS
ENST00000527297/Upstream/66913; ENST00000441418/Downstream/17080;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/36834, chr11-CpG: 47/Downstream/5646
Upstream sequence
GCCAGAGACCCTAGCCAGTCCCTCAAAGCCCCAGTTGGCACAGGCAGCAGTTGAGGTGAGCCTGGGACCAGCCAGAGCCAGGCATGGGCTGACGCTGGCC
Downstream sequence
CAGGCAGCTTCAGGGAGCCCTTCAGTGTCCGTCGGAGGCAAGCTCGGCCCTGTGGCTGCCTCCCGACCCCAAAGGTGGCTGAGTGCCTCTCTACACGGTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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