Basic Information
VIS ID
TVIS44026587
Fusion event
HTLV-1-LINC02758 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
28576507/28554960 (Hg38)
End
28576507/28554960 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02758
Nearest miRNA
hsa-mir-210/Upstream/77412; hsa-let-7a-2/Downstream/6386877;
Nearest TSS
ENST00000527297/Upstream/38128; ENST00000505409/Downstream/124223;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/444286, chr11-CpG: 25/Downstream/1461165
Nearby gene
MIR8068(No orient, 77412)
Upstream sequence
ACATTAAATTGCAACTGTAATAAGGAAGGAGTGATATTATGATACACTATTtaatatggtttagaagtgtgtcacctccaaacctcatgttgaaatgtga
Downstream sequence
ccccaatgttaaggtgggcctagtgctaggtgtttgggacatgggagtggatccctcttgaatagcttggtgctgttctctcagcaatgaatgagttctc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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