Basic Information
VIS ID
TVIS44026629
Fusion event
HTLV-1-OR4P1P integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q11
Reference genome
GRCh37/hg19
Start
55451806/55684330 (Hg38)
End
55451806/55684330 (Hg38)
Orient
-
Location type
Intronic
Target gene
OR4P1P
Nearest miRNA
hsa-mir-129-2/Upstream/7587472; hsa-let-7a-2/Downstream/1059543;
Nearest TSS
ENST00000527297/Upstream/19192; ENST00000641440/Downstream/1830;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/5385729, chr11-CpG: 94/Downstream/188262
Nearby gene
OR4C6(+18234) ;
Upstream sequence
AGGAAAATGTGGTGTCATCAATTGCTTCTGGCAAGGAAGTAACTTGTATGAAAGGCATTTTAGAATTTCATTTTAATGCCTAAATATCAGCCTTAGAATT
Downstream sequence
AATATGGAGTAATACAAAAGCATATATGGTGCATGCAAGAGCCAGCTACAGATAAAAGCTCAGTATCTCCAGCACTTGCTCAGACCTCTTCTGCTTGGGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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