Basic Information
VIS ID
TVIS44026645
Fusion event
HTLV-1-SLC22A20P integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
65000598/65233127 (Hg38)
End
65000598/65233127 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
SLC22A20P
Nearest miRNA
hsa-mir-10392/Upstream/103149; hsa-let-7a-2/Downstream/211331;
Nearest TSS
ENST00000527297/Upstream/23983; ENST00000532391/Downstream/28635;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/7114, chr11-CpG: 81/Downstream/28442
Upstream sequence
AGTCAGGGAATTTTACctccccgaggagaggaatcctgtgtcatccacctttgtgtcccctcccctgggctcacaacagTGAACCATGGGGTGAACAAGG
Downstream sequence
ACCATTCCACTGCCTCTCCCAGGTTCTCCAACTCTGTGGCTTACTATGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCCTATACCTGGTGCAGGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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