Basic Information
VIS ID
TVIS44026661
Fusion event
HTLV-1-LOC100133315 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.4
Reference genome
GRCh37/hg19
Start
71588100/71877054 (Hg38)
End
71588100/71877054 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA11H
Target gene
LOC100133315
Nearest miRNA
hsa-mir-10392/Upstream/403486; hsa-let-7a-2/Downstream/195174;
Nearest TSS
ENST00000527297/Upstream/42342; ENST00000530210/Downstream/1399;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/63247, chr11-CpG: 51/Downstream/203285
Upstream sequence
TGCCCAGGCACCGCTGCCCCAGCAACTCAGGAGGAAGGAACTGAATGGAGGTTTAGGAAAAAACATCTCCAGAGCTTTCATGCCCCTCACTGGCCCTCCT
Downstream sequence
TAGGCTAAGACTTGGGAAGTTTGCCTCTTCCAAGACCTCCCCATCCCTGACTCAAGATTTCATTTTCAAAGTCTCTAAAGGCAGGGAGGACCTGCTCAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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