Basic Information
VIS ID
TVIS44026669
Fusion event
HTLV-1-GDPD4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.5
Reference genome
GRCh37/hg19
Start
76964434/77253389 (Hg38)
End
76964434/77253389 (Hg38)
Orient
-
Location type
Intronic
Target gene
GDPD4
Nearest miRNA
hsa-mir-10392/Upstream/1918203; hsa-let-7a-2/Downstream/2148633;
Nearest TSS
ENST00000527297/Upstream/29087; ENST00000598970/Downstream/34029;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/73449, chr11-CpG: 33/Downstream/158302
Upstream sequence
agtggcagcttgggtgccttgggatgaggcaccatgtagtggcaacactagactctaagatggtaggattcagcagtatctcagactctgtgaggccaag
Downstream sequence
tgcagcagccaagtaccccagtatggctgttgtttgggtcctggggggcaagaagcagcaccatgtgactccattccttagggatggcactatctcagca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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