Basic Information
VIS ID
TVIS44026676
Fusion event
HTLV-1-TUB-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
8089542/8067995 (Hg38)
End
8089542/8067995 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
TUB-AS1
Nearest miRNA
hsa-mir-210/Upstream/833158; hsa-let-7a-2/Downstream/1022317;
Nearest TSS
ENST00000527297/Upstream/28277; ENST00000299506/Downstream/13367;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/36052, chr11-CpG: 89/Downstream/12816
Upstream sequence
TAGTAACTCACAATGCCCAACCCCTTCTCAAACCTGCTATTCCCACTGGGTTCCCTGAGGAGCCACTGTCCAGACCCCTCTTCCTCCAACATGCAGCTCT
Downstream sequence
TCTATCGCCatcgccaccatgaatagagcacttagtgcaggcaccatgctaaaagcttttatttattaaatcatggaatcccctgacgtccctaaaaacc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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