Basic Information
VIS ID
TVIS44026678
Fusion event
HTLV-1-MIR4300HG integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
81706194/81995152 (Hg38)
End
81706194/81995152 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR4300HG
Nearest miRNA
hsa-mir-10392/Upstream/104316; hsa-let-7a-2/Downstream/4283181;
Nearest TSS
ENST00000527297/Upstream/24158; ENST00000526305/Downstream/104891;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/2553992, chr11-CpG: 25/Downstream/694391
Upstream sequence
atggcagaaccagcatttgaacacagtttttaatgttttcaaaggcattgctttttAATATTATACTATTTTCCTCATTAAATATTTAAATTTATAGAGC
Downstream sequence
TACTTAAGCTTGTGCACAGGTTTTTTATTCTTCAAAGTCTCTAATACTTTGAATACAAAATAGCAACACTTATTTGCTTCTATACTTCGATGAAAAGCAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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