Basic Information
VIS ID
TVIS44026679
Fusion event
HTLV-1-DLG2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
85134723/85423679 (Hg38)
End
85134723/85423679 (Hg38)
Orient
-
Location type
Intronic
Target gene
DLG2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p
Nearest miRNA
hsa-mir-10392/Upstream/3532843; hsa-let-7a-2/Downstream/854654;
Nearest TSS
ENST00000527297/Upstream/290556; ENST00000530901/Downstream/101343;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/2137186, chr11-CpG: 24/Downstream/204620
Upstream sequence
actctccttgggcgggtcttgctgcagctgctgtgggggatgggggtgagcttcccaggtcaatggagttatgttcctaggaggattatgactgtctcta
Downstream sequence
ctgtgctatgcaggttgtcagggaagtggggaaaagccagcagtcacagatctcatccagctcccatgtaatcctaagggctggtctcacacccaccatg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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