VISDB Viral Integration Site DataBase

VIS ID

TVIS44026692

Fusion event

HTLV-1-AMOTL1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr11

Cytoband

q21

Reference genome

Start

End

94549322/94816156 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-23b-3p ; hsa-mir-92a-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-124-3p ; hsa-mir-125b-2-3p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-506-3p ; hsa-mir-545-3p ; hsa-mir-3125 ; hsa-mir-3148 ; hsa-mir-3916 ; hsa-mir-4428 ; hsa-mir-4477a ; hsa-mir-4503 ; hsa-mir-5582-5p ; hsa-mir-6792-5p ; hsa-mir-6838-5p ; hsa-mir-6859-5p ; hsa-mir-373-5p ; hsa-mir-616-5p ; hsa-mir-651-3p ; hsa-mir-4326 ; hsa-mir-4691-5p ; hsa-mir-371b-5p ; hsa-mir-5193 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-let-7c-3p ; hsa-mir-16-2-3p ; hsa-mir-195-3p ; hsa-mir-338-5p ; hsa-mir-4729 ; hsa-mir-9-5p ; hsa-mir-4795-3p ; hsa-mir-3924 ; hsa-mir-7151-5p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-7106-3p ; hsa-mir-7113-3p ; hsa-mir-1266-3p ; hsa-mir-660-3p ; hsa-mir-339-5p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-4703-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-1257 ; hsa-mir-2277-5p ; hsa-mir-2467-3p ; hsa-mir-4479 ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-574-3p ; hsa-mir-6825-5p ; hsa-mir-6870-5p ; hsa-mir-7106-5p ; hsa-mir-7111-5p ; hsa-mir-766-5p

Nearest miRNA

hsa-mir-10392/Upstream/349576; hsa-let-7a-2/Downstream/1525282;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/46626, chr11-CpG: 65/Downstream/156971

Upstream sequence

gggtagtacaatgaaactttttttaagatattgatttacccttaacaaaattacaagacattttaattttttaacccaaagtttaacttttattgtatct

Downstream sequence

tgctgtttcagcttcctctccccttttaaaagccccgaaatagtaaatatctccttcaactcacttttggctcccgtaagttttattcctcgggtgctgt