VISDB Viral Integration Site DataBase

VIS ID

TVIS44026702

Fusion event

HTLV-1-IGF1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

q23.2

Reference genome

Start

End

102868768/102474990 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-27a-3p ; hsa-mir-483-3p ; hsa-let-7e-5p ; hsa-mir-190b ; hsa-mir-299-3p ; hsa-let-7i-5p ; hsa-mir-199a-3p ; hsa-mir-190a-5p ; hsa-mir-29a-3p ; hsa-mir-6739-3p ; hsa-mir-576-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-7641 ; hsa-mir-539-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-302a-5p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-6771-3p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-211-3p ; hsa-mir-5011-5p ; hsa-mir-4662a-3p ; hsa-mir-1305 ; hsa-mir-4753-3p ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-130b-5p ; hsa-mir-3065-5p ; hsa-mir-10a-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6514-3p ; hsa-mir-6765-5p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-7160-5p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6087 ; hsa-mir-3197 ; hsa-mir-4649-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-574-5p ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-4711-3p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-133a-3p ; hsa-mir-18b-5p ; hsa-mir-28-5p ; hsa-mir-603 ; hsa-mir-130b-3p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-129-5p ; hsa-mir-128-3p ; hsa-mir-26a-5p

Nearest miRNA

hsa-let-7i/Upstream/2285041; hsa-mir-1178/Downstream/1455435;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/354819, chr12-CpG: 38/Downstream/349352

Nearest cancer related gene

IGF1(TSG, No orient, 0)

Upstream sequence

GCTGTTGACTTTCTAATCACCTAAGAGCTATTTAAGAGATAAGTGATTCTGTACTTGTCAGAGACCCTTTTCCAGATGGTGATATCATTGATGGGTCCCG

Downstream sequence

GAGAAGAACTATGCCAAAAGAGAGCAACAACAAAAAAATCAAGGTCAAGTGGCATAGAGGGCAAATCAGTATGGCATTTCAGTTTGCATTTAGAGACAGT