Basic Information
VIS ID
TVIS44026709
Fusion event
HTLV-1-BTBD11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
108040224/107646447 (Hg38)
End
108040224/107646447 (Hg38)
Orient
+
Location type
Intronic
Target gene
BTBD11
Nearest miRNA
hsa-let-7i/Upstream/3054731; hsa-mir-1178/Downstream/989363;
Nearest TSS
ENST00000382841/Upstream/11615; ENST00000547995/Downstream/39285;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/64919, chr12-CpG: 38/Downstream/39218
Upstream sequence
TCAGCAGCCCCACCTGGAATATAGGAGACCACGTGCTAGAGAAATGCTTTATAAATGTTCAGGGCGGTCATTCTTAAGGCTCTTATTGTTATTTGTTTAG
Downstream sequence
CCTTTGTAAATGAAAACTGCTAGGAGAATAAATTGATTTTAATAAGGCCCAATCCCAACATTTGCTGACTTGATATTTTAAATGCTTATGACCCATCAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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