VISDB Viral Integration Site DataBase

VIS ID

TVIS44026715

Fusion event

HTLV-1-MMAB integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.11

Reference genome

Start

End

109992422/109554617 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-192-5p ; hsa-mir-125b-5p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-377-3p ; hsa-mir-6884-3p ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-216b-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-3130-3p ; hsa-mir-320e ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-1468-5p ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-6507-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-6873-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-342-3p ; hsa-mir-5088-5p ; hsa-mir-6894-3p ; hsa-mir-4763-5p ; hsa-mir-6747-3p ; hsa-mir-5001-3p ; hsa-mir-3680-3p ; hsa-mir-450b-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-6736-3p ; hsa-mir-6831-3p ; hsa-mir-3655 ; hsa-mir-4485-5p ; hsa-mir-4762-5p ; hsa-mir-374b-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-5680 ; hsa-mir-6826-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-7854-3p ; hsa-mir-6880-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-718 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4721 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4716-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-7153-3p ; hsa-mir-1911-3p ; hsa-mir-129-5p ; hsa-mir-2113 ; hsa-mir-5010-3p ; hsa-mir-6808-3p ; hsa-mir-6823-5p ; hsa-mir-758-3p

Nearest miRNA

hsa-let-7i/Upstream/717611; hsa-mir-1178/Downstream/278731;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/76784, chr12-CpG: 53/Downstream/18572

Upstream sequence

gggatcacgactttaaataaaaacaggCTGCTGTTTGTTTCAAAACCCCGTGTTCCCGTGCAATGGGACTGATTGTTTCTGAGAGTTGCCAGTGGTGTGC

Downstream sequence

AAACACTGGGGCAGCGGGGGCTTCGCAGTCACATTTCCTGACTGTAGGGCTTTCATTAACTTTTCCCACCTGGTTCAAAATATGGGAGGACATTTGCTCA