Basic Information
VIS ID
TVIS44026727
Fusion event
HTLV-1-COQ5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
120966866/120529063 (Hg38)
End
120966866/120529063 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
FRA12E ; FRA12C
Target gene
COQ5
Nearest miRNA
hsa-let-7i/Upstream/373564; hsa-mir-3612/Downstream/194130;
Nearest TSS
ENST00000382841/Upstream/12379; ENST00000539486/Downstream/77;
Nearest CpG islands
chr12-CpG: 27/Target, None/Upstream, None/Downstream
Upstream sequence
ACACAGTCTCAAACCCAAAGTGCGTTTCCGCTGCCCGCTTCTCTTGGGACAAGAGCCGAGCACTTAGTAGGTCCCCGGGCCAAGAGCTACGAAGCCCGAG
Downstream sequence
GAGCTGGCAGCCCCGCATCGCCCGCGACCACCCACGGCCGCAATAGCTCCATAGAGCACAGCTCCCGGGGGCCGCCATCTTGGTAGTCGAGTGACAACGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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