Basic Information
VIS ID
TVIS44026731
Fusion event
HTLV-1-LOC105370051 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
GRCh37/hg19
Start
125372306/124887760 (Hg38)
End
125372306/124887760 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
LOC105370051
Nearest miRNA
hsa-let-7i/Upstream/550518; hsa-mir-3612/Downstream/27787;
Nearest TSS
ENST00000382841/Upstream/5092; ENST00000341446/Downstream/26305;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/23618, chr12-CpG: 126/Downstream/26252
Nearby gene
SCARB1(-23787) ;
Upstream sequence
agtgacacatgtactcgggaatagcttgaacccaggaggcagagattacagtgagctgagatcatgccactgcactccagcctgggcaacagagcgagac
Downstream sequence
tctgtctcaaaataaataaataaataaaaccaagtaaaaaATTGAAatatatatatatatagtatgtgtgtgtgtgtgtgtatatatatatatataAttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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