Basic Information
VIS ID
TVIS44026748
Fusion event
HTLV-1-LOC101928362 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
16275741/16122807 (Hg38)
End
16275741/16122807 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928362
Nearest miRNA
hsa-mir-1244-3/Upstream/3206889; hsa-let-7i/Downstream/1550492;
Nearest TSS
ENST00000382841/Upstream/137635; ENST00000534835/Downstream/154878;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/211207, chr12-CpG: 131/Downstream/3006584
Nearby gene
SLC15A5(-65678) ;
Upstream sequence
gatcctcctgcctcagcctcccaagtagctgggactacaggcccgcatcaccatgcccagctaatttttttttgtatttttagtagagatgggttttcac
Downstream sequence
catgttggtcaagctagtctcgatctcttgacctcgtgatccgcccgccttggcctcccaaagtgctgggattacaggagtgagccaccacgcccagctc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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