Basic Information
VIS ID
TVIS44026749
Fusion event
HTLV-1-LOC105369677 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
17007529/16854595 (Hg38)
End
17007529/16854595 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369677
Nearest miRNA
hsa-mir-1244-3/Upstream/3938677; hsa-let-7i/Downstream/818704;
Nearest TSS
ENST00000382841/Upstream/160795; ENST00000539105/Downstream/734662;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/942995, chr12-CpG: 131/Downstream/2274796
Nearby gene
SKP1P2(No orient, 134152)
Upstream sequence
GAAAAGCATAATAAAAGTCCTAGGTAAGAATTGGAGAGGGGGCAGTAAAGACATTGAGAAAAGCTTTATGCATTATTTGGATAAACAGAGGAACAGATTG
Downstream sequence
TAGGAAGCAACAGAACCCAGCATGAGCATGGCATGCACACCAGCTAGTTGGGAGATCATGAGATAGTAGAGGAAATGAGTGATGGGAAGAGGAAGGCAAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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