Basic Information
VIS ID
TVIS44026760
Fusion event
HTLV-1-ST8SIA1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
22351562/22198628 (Hg38)
End
22351562/22198628 (Hg38)
Orient
-
Location type
UTR3
Target gene
ST8SIA1
Nearest miRNA
hsa-mir-1244-3/Upstream/4525234; hsa-let-7i/Downstream/2013793;
Nearest TSS
ENST00000382841/Upstream/80139; ENST00000508615/Downstream/50418;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/151973, chr12-CpG: 102/Downstream/135273
Upstream sequence
acacacacacacacacacacacacacacacacacacacacTCCTATCTAACCAATTATGTCCAAAAGGCATATGTATGGTGTATCTAGTGAGTTGTAATC
Downstream sequence
TACCATAAGAAAATATTTTCATTAAATTGTAGTCATATTTTGAATGCTGTGAGCATGTATATCTATCTTTAAGTGAAGACAAGGTGGAACAATCAAAATT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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