VISDB Viral Integration Site DataBase

VIS ID

TVIS44026766

Fusion event

HTLV-1-KLHL42 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

p11.22

Reference genome

Start

End

27939810/27786877 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-615-3p ; hsa-mir-340-5p ; hsa-mir-181a-5p ; hsa-mir-192-5p ; hsa-mir-32-5p ; hsa-mir-21-5p ; hsa-mir-30c-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-490-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-155-5p ; hsa-mir-548a-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-6835-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-589-5p ; hsa-mir-593-5p ; hsa-mir-610 ; hsa-mir-3925-5p ; hsa-mir-29b-1-5p ; hsa-mir-299-5p ; hsa-mir-6715a-3p ; hsa-mir-124-3p ; hsa-mir-506-3p ; hsa-mir-3714 ; hsa-mir-3910 ; hsa-mir-3163 ; hsa-mir-6505-5p ; hsa-mir-7848-3p ; hsa-mir-892b ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-8084 ; hsa-mir-5582-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-2054 ; hsa-mir-380-3p ; hsa-mir-4521 ; hsa-mir-144-5p ; hsa-mir-374c-3p ; hsa-mir-3941 ; hsa-mir-371a-5p ; hsa-mir-603 ; hsa-mir-6715b-3p ; hsa-mir-4422

Nearest miRNA

hsa-mir-1244-3/Upstream/1912798; hsa-let-7i/Downstream/14536823;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/6072, chr12-CpG: 87/Downstream/183213

Upstream sequence

agtggcccaatcttggctcactgcaagctccgcgtcccgtgttaacgctattctcctgcctcagcctcccgagtagctaggactacaggtgcccgccacc

Downstream sequence

atgcctggctaatttttttttgtatttttagtagagatggggtttcactgtgttagccaggatggtctcgatctcctgacctcgtgatctgcctgccttg