VISDB Viral Integration Site DataBase

VIS ID

TVIS44026799

Fusion event

HTLV-1-KRT80 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.13

Reference genome

Start

End

52564459/52170675 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-7-5p ; hsa-mir-6165 ; hsa-mir-4709-3p ; hsa-mir-4316 ; hsa-mir-4710 ; hsa-mir-486-3p ; hsa-mir-6721-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4763-3p ; hsa-mir-149-3p ; hsa-mir-1207-5p ; hsa-mir-6809-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-7854-3p ; hsa-mir-1827 ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-6743-5p ; hsa-mir-4756-5p ; hsa-mir-4688 ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-3175 ; hsa-mir-4728-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6880-5p ; hsa-mir-139-3p ; hsa-mir-6134 ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-6846-3p ; hsa-mir-6859-3p ; hsa-mir-4750-3p ; hsa-mir-151b ; hsa-mir-151a-5p ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-5195-5p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-1249-5p ; hsa-mir-1252-5p ; hsa-mir-3150b-3p ; hsa-mir-3173-3p ; hsa-mir-4533 ; hsa-mir-4693-3p ; hsa-mir-4747-5p ; hsa-mir-4779 ; hsa-mir-4784 ; hsa-mir-5192 ; hsa-mir-5196-5p ; hsa-mir-5586-3p ; hsa-mir-6797-5p ; hsa-mir-6891-5p ; hsa-mir-9500

Nearest miRNA

hsa-mir-1244-3/Upstream/1936463; hsa-let-7i/Downstream/728214;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/18096, chr12-CpG: 79/Downstream/62334

Upstream sequence

AGGTGAAAGGAAGATCGAATGCTCCTGCCCAATCTCAAGCTGCCATCTGGCTTCCACTCCCAGGGAGTTGATTATGGCAAGAGCAGCTTCCGGAGAAGCT

Downstream sequence

GCTGGGAGCTGGCTGGGGGCAGCCCATCCAGTTCTGACTACTGCCTACTGGGAGGGACCCATGGGAGGAGGAAGGGATGCGGGTGTTCGGGCTGATCTCT