Basic Information
VIS ID
TVIS44026803
Fusion event
HTLV-1-LOC105369617 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
5370346/5261180 (Hg38)
End
5370346/5261180 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369617
Nearest miRNA
hsa-mir-3649/Upstream/3600800; hsa-let-7i/Downstream/1702519;
Nearest TSS
ENST00000382841/Upstream/18029; ENST00000544842/Downstream/29300;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/117776, chr12-CpG: 56/Downstream/169549
Upstream sequence
cagatttgaaagccctttaagaggcaaagtaagctggacttgattagatgtggaggatggggaagaaaaaggagtataggatgatttcgagtttctcaca
Downstream sequence
tgggtgacaagatggatggtagaattatgggttgagaaagtgggatgatagaggaacaagaaacaggatgagaaagtcagggagaaaggatagttctgct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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