Basic Information
VIS ID
TVIS44026826
Fusion event
HTLV-1-GRIP1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
67222604/66828824 (Hg38)
End
67222604/66828824 (Hg38)
Orient
-
Location type
Intronic
Target gene
GRIP1
Nearest miRNA
hsa-let-7i/Upstream/577667; hsa-mir-1178/Downstream/2444333;
Nearest TSS
ENST00000382841/Upstream/24638; ENST00000539109/Downstream/240338;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/593200, chr12-CpG: 105/Downstream/240066
Nearby gene
GRIP1(-149679) ;
Upstream sequence
GGAGGCCTTCTGAGAGTCGCACTATACTTGCTGCCATATCCCTCTGCAGACTTAGTTGTTTTCAAGTGTGTTTTATCTTTCATTTGCTTGATGAGAATCT
Downstream sequence
CATTAAGGGAAGGGATTTAACTTATGTTTATTTTTGTTGGTATTGCTCCTGTAATGCCTCATAAGTGCTGTTGTTCATAGAAGCATTCAACAAAGACAGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate