Basic Information
VIS ID
TVIS44026829
Fusion event
HTLV-1-LOC107984526 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
68487873/68094093 (Hg38)
End
68487873/68094093 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984526
Nearest miRNA
hsa-let-7i/Upstream/1842936; hsa-mir-1178/Downstream/1179064;
Nearest TSS
ENST00000382841/Upstream/104564; ENST00000544089/Downstream/65654;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/443997, chr12-CpG: 54/Downstream/237974
Nearby gene
IFNG(-60677) ;
Upstream sequence
TTTGTCTGGGAATCATGATACTAAAACTCACCTGACATGGAATTTTGGTTCTTAGATGGTACTTGAAAAACAGAGGAGTTTCATATTATTTCTGCAAAGA
Downstream sequence
TGTCAGAAAATGAGTCCAGATCAATGGCCTAACCCTCAACAACTGGGATCAGGGATTTCCCTTCTCCACCTTATTTTGACCATTTATCAGTGATATGATA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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