VISDB Viral Integration Site DataBase

VIS ID

TVIS44026848

Fusion event

HTLV-1-FOXJ2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.31

Reference genome

Start

End

8185446/8032850 (Hg38)

Orient

-

Location type

UTR5

Target gene

miRNAs that regulate target gene

hsa-mir-760 ; hsa-mir-423-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-142-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-302e ; hsa-mir-5590-3p ; hsa-mir-4796-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-197-3p ; hsa-let-7f-2-3p ; hsa-mir-1185-1-3p ; hsa-mir-1185-2-3p ; hsa-mir-193b-5p ; hsa-mir-3170 ; hsa-mir-3202 ; hsa-mir-4271 ; hsa-mir-4475 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4505 ; hsa-mir-4725-3p ; hsa-mir-4731-5p ; hsa-mir-4747-5p ; hsa-mir-483-5p ; hsa-mir-5001-5p ; hsa-mir-5196-5p ; hsa-mir-5691 ; hsa-mir-5787 ; hsa-mir-625-5p ; hsa-mir-6780b-5p ; hsa-mir-6795-5p ; hsa-mir-6805-3p ; hsa-mir-6813-5p ; hsa-mir-6855-5p ; hsa-mir-6887-5p ; hsa-mir-7155-5p ; hsa-mir-7515 ; hsa-mir-762 ; hsa-mir-92b-5p

Nearest miRNA

hsa-mir-141/Upstream/1068659; hsa-let-7i/Downstream/1206617;

Nearest TSS

Nearest CpG islands

chr12-CpG: 69/Target, None/Upstream, None/Downstream

Upstream sequence

GCCCTGACACTGTCTGCCCGCCTTCTGGCTCCCCGGGAGCCCAGACTGGTCGGAGCCCGAGCGGTGGCAGCGCGGGGAGCCCCACGCGCCGAAGGGAGCG

Downstream sequence

GACCCGACAGGACGGCCCTAGAGGAGGTGCTGCCGCCACAGTAGCAGGGACCGGAGTCTCGAGCCGCGGCCTCCCGGACCGTGCTGCCCAGGCCAGCTCA