Basic Information
VIS ID
TVIS44026860
Fusion event
HTLV-1-LINC02391 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
92673285/92279509 (Hg38)
End
92673285/92279509 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LINC02391
Nearest miRNA
hsa-let-7i/Upstream/5534360; hsa-mir-1178/Downstream/2282280;
Nearest TSS
ENST00000382841/Upstream/133062; ENST00000508671/Downstream/84323;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/132952, chr12-CpG: 133/Downstream/649057
Nearby gene
BTG1(-133612) ;
Upstream sequence
tacaaaaattacccaggcatggtgctgagcacctgtaatcccagctactcgggaggctgaggcagaagtgcttgaacccgggaggtagaggttgcagtga
Downstream sequence
gccgagattatgccactgcactccggcgtgggtgacagagtgagactctgtctcgaaaaaaaagaaaaaaaaaagaaaaagaaaaagaaaGATGATCTTC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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